PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737216
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 424aa    MW: 46098.2 Da    PI: 9.3029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737216genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-05206228223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 C+ Cg++F+  ++L+ H+ + H
  676737216 206 ACSQCGEVFPKLESLELHQAVrH 228
                6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.663205229IPR007087Zinc finger, C2H2
PROSITE patternPS000280205228IPR007087Zinc finger, C2H2
SuperFamilySSF563996.62E-14239420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MALLTILPEN AEPPKHTPPP SKRKKRENPT EKLQKPQKPH KPQKQKTVPQ KQPSSWDQIK  60
NLLTCKQIEG SRVHDPSKNS QPGPPTTAHL SPSKLGSSCS SICSFRDVAH GNTRVVHRAD  120
NSPDVANSAT ADSETRLLTR KPGQQGSSSS SRSLMSGSTR SNASGSYTSS STTSFRAMQF  180
RKLSGCYECH MIVDPSRYPI SPRVCACSQC GEVFPKLESL ELHQAVRHAV AFCKCILPVS  240
ELGPEDSGRN IVEIIFKSSW LKKDSPICKI ERILKVHNTQ RTIQRFEDCR DAVKARALQT  300
TRKDARCAAD GNELLRFHCT TLTCSLGSRG SSSLCSNLPN CGVCNVIRHG FQGKSGAGGV  360
NDSTADEKKS TVEDNSTAGV SSSGGVFDSV AVNAGVYSNL EELVVYNPRA ILPCFVVIYK  420
VLES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686989.10.0PREDICTED: uncharacterized protein LOC106390973
RefseqXP_013686988.10.0PREDICTED: uncharacterized protein LOC106390972
RefseqXP_013616458.10.0PREDICTED: uncharacterized protein LOC106322857
TrEMBLA0A0D3AQU80.0A0A0D3AQU8_BRAOL; Uncharacterized protein
STRINGBra008218.1-P0.0(Brassica rapa)
STRINGfgenesh2_kg.2__1849__AT1G75710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-179C2H2-like zinc finger protein